DE EmploymentAlert | Cloud and Database Scientist Bioinformatics (m/w/d)
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Job Title


Cloud and Database Scientist Bioinformatics (m/w/d)


Company : SOMI Solutions GmbH


Location : Mainz, Rheinland-Pfalz


Created : 2024-12-28


Job Type : Full Time


Job Description

Responsibilities: Oversee the setup and configuration of scalable AWS infrastructure, focusing on compute and storage solutions. Contribute to the creation and analysis of a clinical big data database. Work with interdisciplinary teams to create seamless data acquisition interfaces from sequencing facilities, public data sources, and clinical samples. Transition existing pipelines while ensuring version control and addressing challenges such as large data volumes and environment dependencies. Build and maintain both production and development environments, utilizing critical tools like Nextflow, Conda, and Matlab. Automate workflows, containerize applications, and enhance interfaces to create a dynamic and efficient computational ecosystem that supports research teams. Profile: PhD degree in Computer Science, Bioinformatics, or related field Minimum of 3 years of experience with HPCs, cloud infrastructure management and databases Strong knowledge of Amazon Web Services (AWS) experience, including AWS Parallel Server, VPC networking, S3, EC2, RDS, and EFS Strong knowledge of AWS Cloud resources management and optimization Strong knowledge of Terraform and containerization technologies (Docker/Singularity) Experience with SLURM and workflow management systems (Nextflow) Proficient in scripting languages (Python, SQL) Experience with version control systems (Github) Excellent communication and collaboration skills Excellent problem-solving and analytical skills Sprachanforderungen: A Letter of reference is required to be considered for this position All documents must be submitted in English #J-18808-Ljbffr